Lossless CDISC-Native Input and Output for Clinical Datasets
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Documentation for package ‘artoo’ version 0.1.1
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| adam_spec | Bundled CDISC specifications (ADaM and SDTM) |
| apply_spec | Conform a data frame to its spec |
| artoo_checks | Control which conformance checks run |
| artoo_encodings | Encodings for clinical datasets, across R, SAS, and Python |
| artoo_formats | Report which formats are available |
| artoo_spec | Construct a CDISC specification |
| cdisc_adae | Demo adverse events analysis dataset (ADaM ADAE) |
| cdisc_adam_datasets | CDISC demo specification tables (one standard per pair) |
| cdisc_adam_variables | CDISC demo specification tables (one standard per pair) |
| cdisc_adsl | Demo subject-level analysis dataset (ADaM ADSL) |
| cdisc_codelists | CDISC demo specification tables (one standard per pair) |
| cdisc_dm | Demo demographics dataset (SDTM DM) |
| cdisc_sdtm_datasets | CDISC demo specification tables (one standard per pair) |
| cdisc_sdtm_variables | CDISC demo specification tables (one standard per pair) |
| cdisc_spec | CDISC demo specification tables (one standard per pair) |
| cdisc_specs | Bundled CDISC specifications (ADaM and SDTM) |
| cdisc_suppdm | Demo supplemental qualifiers dataset (SDTM SUPPDM) |
| cdisc_ts | Demo trial summary dataset (SDTM TS) |
| cdisc_vs | Demo vital signs dataset (SDTM VS) |
| check_spec | Check a dataset against its spec |
| check_study | Check a whole study against its spec |
| columns | View a dataset's variable attributes, SAS-style |
| conformance | Read the conformance findings a dataset carries |
| decode_column | Derive or translate a variable through its codelist |
| get_meta | Read the metadata a dataset carries |
| is_artoo_checks | Test for a artoo_checks control |
| is_artoo_meta | Test for a artoo_meta object |
| is_artoo_spec | Test for a artoo_spec object |
| members | List the datasets in a file or directory |
| read_dataset | Read a dataset from any supported format |
| read_json | Read a dataset from CDISC Dataset-JSON |
| read_ndjson | Read a dataset from CDISC Dataset-JSON NDJSON |
| read_parquet | Read a dataset from Apache Parquet |
| read_rds | Read a dataset from rds |
| read_spec | Read a specification from JSON, Excel, or Define-XML |
| read_xpt | Read a dataset from SAS XPORT |
| repair_spec | Repair a spec from its conformance findings |
| sdtm_spec | Bundled CDISC specifications (ADaM and SDTM) |
| set_meta | Attach metadata to a dataset |
| set_type | Override a variable's dataType in a spec |
| spec_codelists | Codelist terms |
| spec_comments | Comment definitions in a spec |
| spec_datasets | Dataset names in a spec |
| spec_documents | Document references in a spec |
| spec_keys | Sort keys for a dataset |
| spec_methods | Derivation methods in a spec |
| spec_standard | The CDISC standard a spec implements |
| spec_study | Study-level metadata |
| spec_variables | Variables in a spec |
| sync_meta | Re-align metadata with a transformed data frame |
| validate_spec | Validate a specification for submission-readiness |
| write_dataset | Write a dataset to any supported format |
| write_json | Write a dataset to CDISC Dataset-JSON |
| write_ndjson | Write a dataset to CDISC Dataset-JSON NDJSON |
| write_parquet | Write a dataset to Apache Parquet |
| write_rds | Write a dataset to rds |
| write_spec | Write a specification to native JSON or a P21 Excel workbook |
| write_xpt | Write a dataset to SAS XPORT |
| xpt_members | List the members of a SAS XPORT transport file |