| assay_bundle |
Construct a reproducible scientific export bundle |
| assay_preferences |
Set explicit laboratory preferences for candidate comparison |
| assay_scene |
Extract auditable coordinate features from an assay result |
| assay_tables |
Extract exact scientific tables for all retained assay candidates |
| band_scene |
Extract separate theoretical size lanes from validated assay/profile objects |
| compare_profiles |
Compare visible fragment-size sets under a disclosed arithmetic heuristic |
| design_arms |
Design conventional ARMS primers for two separate allele-specific reactions |
| design_caps |
Design bounded natural CAPS candidates with conserved flanking primers |
| design_dcaps |
Design single-substitution derived CAPS candidates on either primer strand |
| design_tetra_arms |
Design bounded tetra-primer ARMS candidates |
| digest_fragments |
Split a linear strand axis at complete-digest cut boundaries |
| draw_scene |
Draw a source-linked scientific scene using base R graphics |
| evaluate_primer |
Evaluate an unambiguous primer and its perfect-match duplex |
| export_assay |
Export a bundle as exact tables, full RDS, methods and selected figures |
| export_scene |
Export a scene using supported local R devices |
| find_binding_sites |
Find ungapped primer-compatible sites on both template strands |
| find_hairpins |
Enumerate sequence-compatible hairpin stems |
| fragment_profiles |
Construct conditional biallelic fragment mixtures |
| group_bands |
Group theoretical sizes without discarding fragment multiplicity |
| primer_interactions |
Screen ungapped antiparallel primer complementarity |
| rank_assays |
Rank retained assays with fully disclosed preference penalties |
| read_locus |
Import a single locus from DNA or FASTA text |
| reconstruct_amplicon |
Reconstruct both ideal mature products with at most one primer substitution |
| replay_assay |
Rerun the saved design request with installed R functions |
| restriction_enzymes |
Retrieve the curated initial restriction-enzyme facts |
| restriction_sites |
Find every supported restriction recognition site |
| reverse_complement |
Reverse-complement validated uppercase DNA |
| run_app |
Launch the offline SNPAssayR interface |
| screen_primer_pair |
Screen primer-pair products on a target and supplied related copies |
| simulate_digest |
Simulate theoretical complete digestion of a canonical linear product |
| snpassay_app |
Create the offline SNPAssayR Shiny application |
| validate_snp |
Validate one biallelic SNP in a locus |
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